Package: netassoc 0.7.0

netassoc: Inference of Species Associations from Co-Occurrence Data

Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.

Authors:Benjamin Blonder, Naia Morueta-Holme

netassoc_0.7.0.tar.gz
netassoc_0.7.0.zip(r-4.5)netassoc_0.7.0.zip(r-4.4)netassoc_0.7.0.zip(r-4.3)
netassoc_0.7.0.tgz(r-4.4-any)netassoc_0.7.0.tgz(r-4.3-any)
netassoc_0.7.0.tar.gz(r-4.5-noble)netassoc_0.7.0.tar.gz(r-4.4-noble)
netassoc_0.7.0.tgz(r-4.4-emscripten)netassoc_0.7.0.tgz(r-4.3-emscripten)
netassoc.pdf |netassoc.html✨
netassoc/json (API)

Peer review:

Bug tracker:https://github.com/bblonder/netassoc/issues

On CRAN:

5 exports 2 stars 1.10 score 22 dependencies 1 mentions 9 scripts 217 downloads

Last updated 2 years agofrom:9c66e58022. Checks:OK: 3 NOTE: 4. Indexed: yes.

Exports:make_netassoc_networkpairwise_associationpartial_correlationplot_netassoc_matrixplot_netassoc_network

Dependencies:cliclustercorpcorcpp11gluehugeigraphinfotheolatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepkgconfigRcppRcppEigenrlangvctrsvegan