{
  "_id": "6a60758714e95619b75d9e77",
  "Package": "netassoc",
  "Type": "Package",
  "Title": "Inference of Species Associations from Co-Occurrence Data",
  "Version": "0.7.1",
  "Date": "2025-07-21",
  "Maintainer": "Benjamin Blonder <benjamin.blonder@berkeley.edu>",
  "Description": "Infers species associations from community matrices. Uses\nlocal and (optional) regional-scale co-occurrence data by\ncomparing observed partial correlation coefficients between\nspecies to those estimated from regional species distributions.\nExtends Gaussian graphical models to a null modeling framework.\nProvides interface to a variety of inverse covariance matrix\nestimation methods.",
  "License": "GPL-3",
  "Authors@R": "c(person(given = \"Benjamin\",\nfamily = \"Blonder\",\nrole = c(\"aut\", \"cre\"),\nemail = \"benjamin.blonder@berkeley.edu\"),\nperson(given = \"Naia\",\nfamily = \"Morueta-Holme\",\nrole = \"aut\"))",
  "Config/pak/sysreqs": "libglpk-dev libxml2-dev",
  "Repository": "https://bblonder.r-universe.dev",
  "Date/Publication": "2025-07-21 17:05:43 UTC",
  "RemoteUrl": "https://github.com/bblonder/netassoc",
  "RemoteRef": "HEAD",
  "RemoteSha": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-22 07:40:46 UTC",
    "User": "root"
  },
  "Author": "Benjamin Blonder [aut, cre],\nNaia Morueta-Holme [aut]",
  "_user": "bblonder",
  "_type": "src",
  "_file": "netassoc_0.7.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/a48098c73f804f5e5d93f67fbb47694e7ca0f0170293ff2b0952026733bbe6b7",
  "_filesize": 114744,
  "_sha256": "a48098c73f804f5e5d93f67fbb47694e7ca0f0170293ff2b0952026733bbe6b7",
  "_expires": "2026-10-30T07:47:17.000Z",
  "_created": "2026-07-22T07:40:46.000Z",
  "_published": "2026-07-22T07:47:19.752Z",
  "_jobs": [
    {
      "job": 88861794423,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8521965421"
    },
    {
      "job": 88861794491,
      "time": 136,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8521957272"
    },
    {
      "job": 88861794412,
      "time": 132,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8521947787"
    },
    {
      "job": 88861794367,
      "time": 141,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8521951149"
    },
    {
      "job": 88861260602,
      "time": 169,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8521899085"
    },
    {
      "job": 88861794346,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8521948657"
    },
    {
      "job": 88861794369,
      "time": 84,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8521936957"
    },
    {
      "job": 88861794397,
      "time": 95,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8521940856"
    },
    {
      "job": 88861794389,
      "time": 351,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8522046494"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963",
  "_status": "success",
  "_upstream": "https://github.com/bblonder/netassoc",
  "_commit": {
    "id": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
    "author": "bblonder <bblonder@gmail.com>",
    "committer": "bblonder <bblonder@gmail.com>",
    "message": "fixed doc issues for CRAN\n",
    "time": 1753117543
  },
  "_maintainer": {
    "name": "Benjamin Blonder",
    "email": "benjamin.blonder@berkeley.edu",
    "login": "bblonder",
    "description": "",
    "uuid": 651071
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "igraph",
      "role": "Depends"
    },
    {
      "package": "infotheo",
      "role": "Depends"
    },
    {
      "package": "corpcor",
      "role": "Imports"
    },
    {
      "package": "huge",
      "role": "Imports"
    },
    {
      "package": "vegan",
      "role": "Imports"
    }
  ],
  "_owner": "bblonder",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "bblonder",
      "count": 17,
      "uuid": 651071
    }
  ],
  "_userbio": {
    "uuid": 651071,
    "type": "user",
    "name": "Benjamin Blonder",
    "followers": 56
  },
  "_downloads": {
    "count": 187,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/netassoc"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/bblonder/netassoc",
  "_searchresults": 10,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/netassoc.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bblonder/netassoc",
  "_realowner": "bblonder",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.4.1",
      "date": "2015-01-31"
    },
    {
      "version": "0.4.3",
      "date": "2015-03-13"
    },
    {
      "version": "0.4.7",
      "date": "2015-06-24"
    },
    {
      "version": "0.6.0",
      "date": "2015-09-09"
    },
    {
      "version": "0.6.2",
      "date": "2015-11-24"
    },
    {
      "version": "0.6.3",
      "date": "2017-06-05"
    },
    {
      "version": "0.7.0",
      "date": "2022-07-20"
    },
    {
      "version": "0.7.1",
      "date": "2025-07-21"
    },
    {
      "version": "0.7.2",
      "date": "2026-01-19"
    }
  ],
  "_exports": [
    "make_netassoc_network",
    "pairwise_association",
    "partial_correlation",
    "plot_netassoc_matrix",
    "plot_netassoc_network"
  ],
  "_help": [
    {
      "page": "netassoc-package",
      "title": "Inference of Species Associations from Co-Occurrence Data",
      "topics": [
        "netassoc-package",
        "netassoc"
      ]
    },
    {
      "page": "make_netassoc_network",
      "title": "Infer species-association network",
      "topics": [
        "make_netassoc_network"
      ]
    },
    {
      "page": "pairwise_association",
      "title": "Pairwise associations",
      "topics": [
        "pairwise_association"
      ]
    },
    {
      "page": "partial_correlation",
      "title": "Partial correlation coefficients",
      "topics": [
        "partial_correlation"
      ]
    },
    {
      "page": "plot_netassoc_matrix",
      "title": "Plots matrix with colormap",
      "topics": [
        "plot_netassoc_matrix"
      ]
    },
    {
      "page": "plot_netassoc_network",
      "title": "Plots species association network",
      "topics": [
        "plot_netassoc_network"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "cluster",
    "corpcor",
    "cpp11",
    "glue",
    "huge",
    "igraph",
    "infotheo",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "mgcv",
    "nlme",
    "permute",
    "pkgconfig",
    "Rcpp",
    "rlang",
    "vctrs",
    "vegan"
  ],
  "_score": 2.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "netassoc",
  "_universes": [
    "bblonder"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.7.1",
      "date": "2026-07-22T07:43:07.000Z",
      "distro": "resolute",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/7c140922296dcebbcb75ec025a8dd1ac6fa7d0caabafafae343b028f4c40abbd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.7.1",
      "date": "2026-07-22T07:42:48.000Z",
      "distro": "resolute",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/a428c34bac18d494d2b0803fa109659cca8cbfd6c19ef2d5cfd981ca59f1b838",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.7.1",
      "date": "2026-07-22T07:42:38.000Z",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/08757bbd46677f4973236c4fb8f9a60916c33eb84a0557f474a9197d231f064e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.7.1",
      "date": "2026-07-22T07:42:43.000Z",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/317473f2b98e396b61272e216ad1db1f9d32c20a1d5860f6d91370ce9749c78e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.7.1",
      "date": "2026-07-22T07:42:57.000Z",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/72d94e3414ee2566d4f443870cad9c3863c342ad10366f8cda17a1526abed18a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.7.1",
      "date": "2026-07-22T07:41:53.000Z",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/25c717f4a5a06a3a305ed1bd172737fea146b99ceebc8d57ac27a6ea263e08ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.7.1",
      "date": "2026-07-22T07:42:10.000Z",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/8aba87e7a8023ff42302efff0734e16800b6203bdddb1dad5f012a0426acad0c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.7.1",
      "date": "2026-07-22T07:44:46.000Z",
      "commit": "1aca4b15d0a7ac30146b05a6fbf0425432a03e78",
      "fileid": "https://r2.ropensci.org/d033102bbd9fc306027161b340fec03bc46418942dc2fe75a75a51d4c1b5f183",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bblonder/actions/runs/29900908963"
    }
  ]
}